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@@ -106,3 +106,449 @@ The last section, \ref{sec:cite}, shows how recognize software and external data
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An appendix is included to show how to construct one and provide some information on how article charges are calculated.
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Additional information is available both embedded in the comments of this \latex\ file and in the online documentation at <http://journals.aas.org/authors/aastex.html>.
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+
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+# Manuscript styles {#sec:style}
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+
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+The default style in \aastex\ v6.2 is a tight single column style, e.g. 10
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+point font, single spaced. The single column style is very useful for
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+article with wide equations. It is also the easiest to style to work with
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+since figures and tables, see Section \ref{sec:floats}, will span the
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+entire page, reducing the need for address float sizing.
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+
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+To invoke a two column style similar to the what is produced in
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+the published PDF copy use \
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+
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+\noindent `\documentclass[twocolumn]{aastex62}`. \
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+
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+\noindent Note that in the two column style figures and tables will only
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+span one column unless specifically ordered across both with the "*" flag,
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+e.g. \
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+
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+\noindent`\begin{figure*}` ... `\end{figure*}`, \
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+\noindent`\begin{table*}` ... `\end{table*}`, and \
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+\noindent`\begin{deluxetable*}` ... `\end{deluxetable*}`. \
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+
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+\noindent This option is ignored in the onecolumn style.
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+
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+Some other style options are outlined in the commented sections of this
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+article. Any combination of style options can be used.
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+
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+Two style options that are needed to fully use the new revision tracking
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+feature, see Section \ref{sec:highlight}, are `linenumbers` which
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+uses the lineno style file to number each article line in the left margin and
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+`trackchanges` which controls the revision and commenting highlight
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+output.
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+
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+There is also a new `modern` option that uses a Daniel
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+Foreman-Mackey and David Hogg design to produce stylish, single column
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+output that has wider left and right margins. It is designed to have fewer
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+words per line to improve reader retention. It also looks better on devices
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+with smaller displays such as smart phones.
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+
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+For a Research Note use the `RNAAS` option which will produce a
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+manuscript with no abstract and in the `modern` style.
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+
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+# Floats {#sec:floats}
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+
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+Floats are non-text items that generally can not be split over a page.
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+They also have captions and can be numbered for reference. Primarily these
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+are figures and tables but authors can define their own. \latex\ tries to
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+place a float where indicated in the manuscript but will move it later if
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+there is not enough room at that location, hence the term "float".
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+
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+Authors are encouraged to embed their tables and figures within the text as
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+they are mentioned. Please do not place the figures and text at the end of
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+the article as was the old practice. Editors and the vast majority of
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+referees find it much easier to read a manuscript with embedded figures and
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+tables.
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+
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+Depending on the number of floats and the particular amount of text and
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+equations present in a manuscript the ultimate location of any specific
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+float can be hard to predict prior to compilation. It is recommended that
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+authors textbf{not} spend significant time trying to get float placement
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+perfect for peer review. The AAS Journal's publisher has sophisticated
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+typesetting software that will produce the optimal layout during
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+production.
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+
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+Note that authors of Research Notes are only allowed one float, either one
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+table or one figure.
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+
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+\startlongtable
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+\begin{deluxetable}{c|cc}
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+\tablecaption{ApJ costs from 1991 to 2013\tablenotemark{a} \label{tab:table}}
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+\tablehead{
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+\colhead{Year} & \colhead{Subscription} & \colhead{Publication} \\
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+\colhead{} & \colhead{cost} & \colhead{charges\tablenotemark{b}}\\
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+\colhead{} & \colhead{(\$)} & \colhead{(\$/page)}
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+}
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+\colnumbers
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+\startdata
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+1991 & 600 & 100 \\
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+1992 & 650 & 105 \\
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+1993 & 550 & 103 \\
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+1994 & 450 & 110 \\
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+1995 & 410 & 112 \\
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+1996 & 400 & 114 \\
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+1997 & 525 & 115 \\
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+1998 & 590 & 116 \\
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+1999 & 575 & 115 \\
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+2000 & 450 & 103 \\
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+2001 & 490 & 90 \\
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+2002 & 500 & 88 \\
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+2003 & 450 & 90 \\
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+2004 & 460 & 88 \\
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+2005 & 440 & 79 \\
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+2006 & 350 & 77 \\
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+2007 & 325 & 70 \\
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+2008 & 320 & 65 \\
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+2009 & 190 & 68 \\
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+2010 & 280 & 70 \\
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+2011 & 275 & 68 \\
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+2012 & 150 & 56 \\
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+2013 & 140 & 55 \\
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+\enddata
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+\tablenotetext{a}{Adjusted for inflation}
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+\tablenotetext{b}{Accounts for the change from page charges to digital quanta in April, 2011}
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+\tablecomments{Note that {\tt \string \colnumbers} does not work with the
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+vertical line alignment token. If you want vertical lines in the headers you
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+can not use this command at this time.}
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+\end{deluxetable}
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+
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+For authors that do want to take the time to optimize the locations of
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+their floats there are some techniques that can be used. The simplest
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+solution is to placing a float earlier in the text to get the position
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+right but this option will break down if the manuscript is altered, see
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+Table \ref{tab:table}. A better method is to force \latex\ to place a
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+float in a general area with the use of the optional `[placement
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+specifier]` parameter for figures and tables. This parameter goes after
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+`\begin{figure}`, `\begin{table}`, and
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+`\begin{deluxetable}`. The main arguments the specifier takes
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+are "h", "t", "b", and "!". These tell \latex\ to place the float
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+\underline{h}ere (or as close as possible to this location as possible), at
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+the \underline{t}op of the page, and at the \underline{b}ottom of the page.
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+The last argument, "!", tells \latex\ to override its internal method of
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+calculating the float position. A sequence of rules can be created by
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+using multiple arguments. For example, `\begin{figure}[htb!]`
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+tells \latex\ to try the current location first, then the top of the page
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+and finally the bottom of the page without regard to what it thinks the
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+proper position should be. Many of the tables and figures in this article
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+use a placement specifier to set their positions.
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+
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+Note that the \latex\ `tabular` environment is not a float. Only
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+when a `tabular` is surrounded by `\begin{table}` ...
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+`\end{table}` is it a true float and the rules and suggestions
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+above apply.
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+
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+In AASTeX v6.2 all deluxetables are float tables and thus if they are
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+longer than a page will spill off the bottom. Long deluxetables should
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+begin with the `\startlongtable` command. This initiates a
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+longtable environment. Authors might have to use `\clearpage` to
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+isolate a long table or optimally place it within the surrounding text.
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+
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+\begin{deluxetable*}{ccCrlc}[b!]
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+\tablecaption{Column math mode in an observation log \label{tab:mathmode}}
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+\tablecolumns{6}
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+\tablenum{2}
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+\tablewidth{0pt}
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+\tablehead{
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+\colhead{UT start time\tablenotemark{a}} &
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+\colhead{MJD start time\tablenotemark{a}} &
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+\colhead{Seeing} & \colhead{Filter} & \colhead{Inst.} \\
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+\colhead{(YYYY-mm-dd)} & \colhead{(d)} &
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+\colhead{(arcsec)} & \colhead{} & \colhead{}
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+}
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+\startdata
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+2012-03-26 & 56012.997 & \sim 0.\arcsec5 & H$\alpha$ & NOT \\
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+2012-03-27 & 56013.944 & 1.\arcsec5 & grism & SMARTS \\
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+2012-03-28 & 56014.984 & \nodata & F814M & HST \\
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+2012-03-30 & 56016.978 & 1.\arcsec5\pm0.25 & B\&C & Bok \\
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+\enddata
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+\tablenotetext{a}{At exposure start.}
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+\tablecomments{The "C" command column identifier in the 3 column turns on
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+math mode for that specific column. One could do the same for the next
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+column so that dollar signs would not be needed for H$\alpha$
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+but then all the other text would also be in math mode and thus typeset
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+in Latin Modern math and you will need to put it back to Roman by hand.
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+Note that if you do change this column to math mode the dollar signs already
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+present will not cause a problem. Table \ref{tab:mathmode} is published
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+in its entirety in the machine readable format. A portion is
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+shown here for guidance regarding its form and content.}
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+\end{deluxetable*}
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+
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+## Tables {#subsec:tables}
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+
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+Tables can be constructed with \latex's standard table environment or the
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+\aastex's deluxetable environment. The deluxetable construct handles long
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+tables better but has a larger overhead due to the greater amount of
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+defined mark up used set up and manipulate the table structure. The choice
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+of which to use is up to the author. Examples of both environments are
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+used in this manuscript. Table \ref{tab:table} is a simple deluxetable
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+example that gives the approximate changes in the subscription costs and
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+author publication charges from 1991 to 2013.
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+
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+Tables longer than 200 data lines and complex tables should only have a
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+short example table with the full data set available in the machine
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+readable format. The machine readable table will be available in the HTML
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+version of the article with just a short example in the PDF. Authors are
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+required to indicate to the reader where the data can be obtained in the
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+table comments. Suggested text is given in the comments of Table
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+\ref{tab:mathmode}. Authors are encouraged to create their own machine
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+readable tables using the online tool at
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+<http://authortools.aas.org/MRT/upload.html>.
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+
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+\aastex\ v6 introduces five new table features that are designed to make
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+table construction easier and the resulting display better for AAS Journal
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+authors. The items are:
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+
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+1. Declaring math mode in specific columns,
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+
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+2. Column decimal alignment,
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+
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+3. Automatic column header numbering,
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+
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+4. Hiding columns, and
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+
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+5. Splitting wide tables into two or three parts.
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+
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+Each of these new features are illustrated in following Table examples.
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+All five features work with the regular \latex\ tabular environment and in
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+\aastex's deluxetable environment. The examples in this manuscript also
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+show where the two process differ.
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+
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+### Column math mode
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+
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+Both the \latex\ tabular and \aastex\ deluxetable require an argument to
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+define the alignment and number of columns. The most common values are
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+"c", "l" and "r" for \underline{c}enter, \underline{l}eft, and
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+\underline{r}ight justification. If these values are capitalized, e.g.
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+"C", "L", or "R", then that specific column will automatically be in math
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+mode meaning that \$s are not required. Note that having embedded dollar
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+signs in the table does not affect the output. The third and forth columns
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+of Table \ref{tab:mathmode} shows how this math mode works.
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+
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+### Decimal alignment
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+
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+Aligning a column by the decimal point can be difficult with only center,
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+left, and right justification options. It is possible to use phantom calls
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+in the data, e.g. `\phn`, to align columns by hand but this can
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+be tedious in long or complex tables. To address this \aastex\ introduces
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+the `\decimals` command and a new column justification option,
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+"D", to align data in that column on the decimal. In deluxetable the
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+`\decimals` command is invoked before the `\startdata`
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+call but can be anywhere in \latex's tabular environment.
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+
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+Two other important thing to note when using decimal alignment is that each
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+decimal column \textit{must end with a space before the ampersand}, e.g.
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+"\&\&" is not allowed. Empty decimal columns are indicated with a decimal,
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+e.g. ".". Do not use deluxetable's `\nodata` command.
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+
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+The "D" alignment token works by splitting the column into two parts on the
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+decimal. While this is invisible to the user one must be aware of how it
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+works so that the headers are accounted for correctly. All decimal column
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+headers need to span two columns to get the alignment correct. This can be
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+done with a multicolumn call, e.g `\multicolumn2c{}` or
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+`\multicolumn{2}{c}{}`, or use the new
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+`\twocolhead{}` command in deluxetable. Since \latex\ is
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+splitting these columns into two it is important to get the table width
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+right so that they appear joined on the page. You may have to run the
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+\latex\ compiler twice to get it right. Table \ref{tab:decimal}
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+illustrates how decimal alignment works in the tabular environment with a
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+$\pm$ symbol embedded between the last two columns.
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+
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+\setcounter{table}{2}
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+\begin{table}[h!]
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+\centering
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+\caption{Decimal alignment made easy} \label{tab:decimal}
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+\begin{tabular}{cD@{$\pm$}D}
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+\tablewidth{0pt}
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+\hline
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+\hline
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+Column & \multicolumn2c{Value} & \multicolumn2c{Uncertainty}\\
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+\hline
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+\decimals
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+A & 1234 & 100.0 \\
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+B & 123.4 & 10.1 \\
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+C & 12.34 & 1.01 \\
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+D & 1.234 & 0.101 \\
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+E & .1234 & 0.01001 \\
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+F & 1.0 & . \\
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+\hline
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+\multicolumn{5}{c}{NOTE. - Two decimal aligned columns}
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+\end{tabular}
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+\end{table}
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+
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+\subsubsection{Automatic column header numbering} \label{subsubsec:autonumber}
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+
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+The command `\colnumbers` can be included to automatically number
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+each column as the last row in the header. Per the AAS Journal table format
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+standards, each column index numbers will be surrounded by parentheses. In
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+a \latex\ tabular environment the `\colnumbers` should be invoked
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+at the location where the author wants the numbers to appear, e.g. after
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+the last line of specified table header rows. In deluxetable this command
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+has to come before `\startdata`. `\colnumbers` will
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+not increment for columns hidden by the "h" command, see Section
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+\ref{subsubsec:hide}. Table \ref{tab:table} uses this command to
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+automatically generate column index numbers.
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+
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+Note that when using decimal alignment in a table the command
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+`\decimalcolnumbers` must be used instead of
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+`\colnumbers` and `\decimals`. Table \ref{tab:messier}
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+illustrates this specific functionality.
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+
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+### Hiding columns {#subsubsec:hide}
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+
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+Entire columns can be \underline{h}idden from display simply by changing
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+the specified column identifier to "h". In the \latex\ tabular environment
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+this column identifier conceals the entire column including the header
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+columns. In \aastex's deluxetables the header row is specifically
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+declared with the `\tablehead` call and each header column is
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+marked with `\colhead` call. In order to make a specific header
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+disappear with the "h" column identifier in deluxetable use
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+`\nocolhead` instead to suppress that particular column header.
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+
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+Authors can use this option in many different ways. Since column data can
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+be easily suppressed authors can include extra information and hid it
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+based on the comments of co-authors or referees. For wide tables that will
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+have a machine readable version, authors could put all the information in
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+the \latex\ table but use this option to hid as many columns as needed until
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+it fits on a page. This concealed column table would serve as the
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+example table for the full machine readable version. Regardless of how
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+columns are obscured, authors are responsible for removing any unneeded
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+column data or alerting the editorial office about how to treat these
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+columns during production for the final typeset article.
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+
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+Table \ref{tab:messier} provides some basic information about the first ten
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+Messier Objects and illustrates how many of these new features can be used
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+together. It has automatic column numbering, decimal alignment of the
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+distances, and one concealed column. The Common name column
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+is the third in the \latex\ deluxetable but does not appear when the article
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+is compiled. This hidden column can be shown simply by changing the "h" in
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+the column identifier preamble to another valid value. This table also
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+uses `\tablenum` to renumber the table because a \latex\ tabular
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+table was inserted before it.
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+
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+\begin{deluxetable*}{cchlDlc}
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+\tablenum{4}
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+\tablecaption{Fun facts about the first 10 messier objects\label{tab:messier}}
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+\tablewidth{0pt}
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+\tablehead{
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+\colhead{Messier} & \colhead{NGC/IC} & \nocolhead{Common} & \colhead{Object} &
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+\multicolumn2c{Distance} & \colhead{} & \colhead{V} \\
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+\colhead{Number} & \colhead{Number} & \nocolhead{Name} & \colhead{Type} &
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+\multicolumn2c{(kpc)} & \colhead{Constellation} & \colhead{(mag)}
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+}
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+\decimalcolnumbers
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+\startdata
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+M1 & NGC 1952 & Crab Nebula & Supernova remnant & 2 & Taurus & 8.4 \\
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+M2 & NGC 7089 & Messier 2 & Cluster, globular & 11.5 & Aquarius & 6.3 \\
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+M3 & NGC 5272 & Messier 3 & Cluster, globular & 10.4 & Canes Venatici & 6.2 \\
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+M4 & NGC 6121 & Messier 4 & Cluster, globular & 2.2 & Scorpius & 5.9 \\
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+M5 & NGC 5904 & Messier 5 & Cluster, globular & 24.5 & Serpens & 5.9 \\
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+M6 & NGC 6405 & Butterfly Cluster & Cluster, open & 0.31 & Scorpius & 4.2 \\
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+M7 & NGC 6475 & Ptolemy Cluster & Cluster, open & 0.3 & Scorpius & 3.3 \\
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+M8 & NGC 6523 & Lagoon Nebula & Nebula with cluster & 1.25 & Sagittarius & 6.0 \\
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+M9 & NGC 6333 & Messier 9 & Cluster, globular & 7.91 & Ophiuchus & 8.4 \\
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+M10 & NGC 6254 & Messier 10 & Cluster, globular & 4.42 & Ophiuchus & 6.4 \\
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+\enddata
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+\tablecomments{This table "hides" the third column in the \latex\ when compiled.
|
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+The Distance is also centered on the decimals. Note that when using decimal
|
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|
+alignment you need to include the `\decimals` command before `\\startdata` and all of the values in that column have to have a space before the next ampersand.}
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+\end{deluxetable*}
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+
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+\subsubsection{Splitting a table into multiple horizontal components}
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+
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+Since the AAS Journals are now all electronic with no print version there is
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+no reason why tables can not be as wide as authors need them to be.
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+However, there are some artificial limitations based on the width of a
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|
+print page. The old way around this limitation was to rotate into
|
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|
+landscape mode and use the smallest available table font
|
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|
+sizes, e.g. `\tablewidth`, to get the table to fit.
|
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|
+Unfortunately, this was not alway enough but now along with the hide column
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|
+option outlined in Section \ref{subsubsec:hide} there is a new way to break
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|
+a table into two or three components so that it flows down a page by
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|
+invoking a new table type, splittabular or splitdeluxetable. Within these
|
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+tables a new "B" column separator is introduced. Much like the vertical
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+bar option, "$\vert$", that produces a vertical table lines, e.g. Table
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|
+\ref{tab:table}, the new "B" separator indicates where to \underline{B}reak
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+a table. Up to two "B"s may be included.
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+
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+Table 5 % \ref{tab:deluxesplit} this freaks it out when it is used!
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|
+shows how to split a wide deluxetable into three parts with
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|
+the `\splitdeluxetable` command. The `\colnumbers`
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|
+option is on to show how the automatic column numbering carries through the
|
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|
+second table component, see Section \ref{subsubsec:autonumber}.
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|
+
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|
+The last example, Table \ref{tab:tablesplit}, shows how to split the same
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|
+table but with a regular \latex\ tabular call and into two parts. Decimal
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|
+alignment is included in the third column and the "Component" column is
|
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|
+hidden to illustrate the new features working together.
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+
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+\begin{splitdeluxetable*}{lccccBcccccBcccc}
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|
+\tabletypesize{\scriptsize}
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|
+\tablewidth{0pt}
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|
+\tablenum{5}
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|
+\tablecaption{Measurements of Emission Lines: two breaks \label{tab:deluxesplit}}
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|
+\tablehead{
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|
+\colhead{Model} & \colhead{Component}& \colhead{Shift} & \colhead{FWHM} &
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|
+\multicolumn{10}{c}{Flux} \\
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|
+\colhead{} & \colhead{} & \colhead{($\rm
|
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|
+km~s^{-1}$)}& \colhead{($\rm km~s^{-1}$)} & \multicolumn{10}{c}{($\rm
|
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|
+10^{-17}~erg~s^{-1}~cm^{-2}$)} \\
|
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|
+\cline{5-14}
|
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|
+\colhead{} & \colhead{} &
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|
+\colhead{} & \colhead{} & \colhead{Ly$\alpha$} & \colhead{N\,{\footnotesize
|
|
|
+V}} & \colhead{Si\,{\footnotesize IV}} & \colhead{C\,{\footnotesize IV}} &
|
|
|
+\colhead{Mg\,{\footnotesize II}} & \colhead{H$\gamma$} & \colhead{H$\beta$}
|
|
|
+& \colhead{H$\alpha$} & \colhead{He\,{\footnotesize I}} &
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|
+\colhead{Pa$\gamma$}
|
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|
+}
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|
+\colnumbers
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|
+\startdata
|
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|
+{ }& BELs& -97.13 & 9117$\pm 38$& 1033$\pm 33$&$< 35$&$< 166$& 637$\pm 31$& 1951$\pm 26$& 991$\pm 30$& 3502$\pm 42$& 20285$\pm 80$& 2025$\pm 116$& 1289$\pm 107$\\
|
|
|
+{Model 1}& IELs& -4049.123 & 1974$\pm 22$& 2495$\pm 30$&$< 42$&$< 109$& 995$\pm 186$& 83$\pm 30$& 75$\pm 23$& 130$\pm 25$& 357$\pm 94$& 194$\pm 64$& 36$\pm 23$\\
|
|
|
+{ }& NELs& \nodata & 641$\pm 4$& 449$\pm 23$&$< 6$&$< 9$& -- & 275$\pm 18$& 150$\pm 11$& 313$\pm 12$& 958$\pm 43$& 318$\pm 34$& 151$\pm 17$\\
|
|
|
+\hline
|
|
|
+{ }& BELs& -85 & 8991$\pm 41$& 988$\pm 29$&$< 24$&$< 173$& 623$\pm 28$& 1945$\pm 29$& 989$\pm 27$& 3498$\pm 37$& 20288$\pm 73$& 2047$\pm 143$& 1376$\pm 167$\\
|
|
|
+{Model 2}& IELs& -51000 & 2025$\pm 26$& 2494$\pm 32$&$< 37$&$< 124$& 1005$\pm 190$& 72$\pm 28$& 72$\pm 21$& 113$\pm 18$& 271$\pm 85$& 205$\pm 72$& 34$\pm 21$\\
|
|
|
+{ }& NELs& 52 & 637$\pm 10$& 477$\pm 17$&$< 4$&$< 8$& -- & 278$\pm 17$& 153$\pm 10$& 317$\pm 15$& 969$\pm 40$& 325$\pm 37$&
|
|
|
+ 147$\pm 22$\\
|
|
|
+\enddata
|
|
|
+\tablecomments{This is an example of how to split a deluxetable. You can
|
|
|
+split any table with this command into two or three parts. The location of
|
|
|
+the split is given by the author based on the placement of the "B"
|
|
|
+indicators in the column identifier preamble. For more information please
|
|
|
+look at the new \aastex\ instructions.}
|
|
|
+\end{splitdeluxetable*}
|
|
|
+
|
|
|
+%\clearpage
|
|
|
+
|
|
|
+\setcounter{table}{5}
|
|
|
+\begin{table*}[h!]
|
|
|
+\caption{Measurements of Emission Lines: one break\label{tab:tablesplit}}
|
|
|
+\begin{splittabular}{lhDccccBccccccc}
|
|
|
+%\multicolumn{5}{c}{Table 6} \\
|
|
|
+%\multicolumn{5}{c}{Measurements of Emission Lines} \\
|
|
|
+\hline
|
|
|
+\hline
|
|
|
+Model & Component & \multicolumn2c{Shift} & FWHM &
|
|
|
+\multicolumn{10}{c}{Flux} \\
|
|
|
+ & & \multicolumn2c{($\rm km~s^{-1}$)} & {($\rm km~s^{-1}$)} &
|
|
|
+\multicolumn{10}{c}{($\rm 10^{-17}~erg~s^{-1}~cm^{-2}$)} \\
|
|
|
+\cline{5-15}
|
|
|
+ & & & & & {Ly$\alpha$} & {N\,{\footnotesize V}} &
|
|
|
+{Si\,{\footnotesize IV}} & {C\,{\footnotesize IV}} &
|
|
|
+{Mg\,{\footnotesize II}} & {H$\gamma$} & {H$\beta$}
|
|
|
+& {H$\alpha$} & {He\,{\footnotesize I}} & {Pa$\gamma$} \\
|
|
|
+%\hline
|
|
|
+\decimalcolnumbers
|
|
|
+ & BELs& -97.13 & 9117$\pm 38$& 1033$\pm 33$&$< 35$&$< 166$& 637$\pm 31$& 1951$\pm 26$& 991$\pm 30$& 3502$\pm 42$& 20285$\pm 80$& 2025$\pm 116$& 1289$\pm 107$\\
|
|
|
+Model 1 & IELs& -4049.123 & 1974$\pm 22$& 2495$\pm 30$&$< 42$&$< 109$& 995$\pm 186$& 83$\pm 30$& 75$\pm 23$& 130$\pm 25$& 357$\pm 94$& 194$\pm 64$& 36$\pm 23$\\
|
|
|
+ & NELs& . & 641$\pm 4$& 449$\pm 23$&$< 6$&$< 9$& -- & 275$\pm 18$& 150$\pm 11$& 313$\pm 12$& 958$\pm 43$& 318$\pm 34$& 151$\pm 17$\\
|
|
|
+\hline
|
|
|
+ & BELs& -85 & 8991$\pm 41$& 988$\pm 29$&$< 24$&$< 173$& 623$\pm 28$& 1945$\pm 29$& 989$\pm 27$& 3498$\pm 37$& 20288$\pm 73$& 2047$\pm 143$& 1376$\pm 167$\\
|
|
|
+Model 2 & IELs& -51000 & 2025$\pm 26$& 2494$\pm 32$&$< 37$&$< 124$& 1005$\pm 190$& 72$\pm 28$& 72$\pm 21$& 113$\pm 18$& 271$\pm 85$& 205$\pm 72$& 34$\pm 21$\\
|
|
|
+ & NELs& 52 & 637$\pm 10$& 477$\pm 17$&$< 4$&$< 8$& -- & 278$\pm 17$& 153$\pm 10$& 317$\pm 15$& 969$\pm 40$& 325$\pm 37$& 147$\pm 22$\\
|
|
|
+\hline
|
|
|
+\end{splittabular}
|
|
|
+\end{table*}
|
|
|
+
|
